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sequence analysis -凯发k8网页登录

genomic and proteomic sequences, alignment, and phylogenetics

gain deeper understanding of sequence features, functions, and evolution by performing analyses on nucleotide or amino acid sequences. compare sequences using pairwise or multiple sequence alignment methods. calculate sequence properties and statistics to gain more insight on physical, chemical, and biological characteristics of your data. perform blast searches against known sequences in online or local databases. determine the evolutionary relationships between organisms by building phylogenetic trees from pairwise distances of sequences.

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    • import data in various formats, including fasta, genbank, genpept, embl, blast, pdb, pfam, clustalw, gcg, phylip, newick, and fastq, from public repositories and local file systems; write to various formats, including fasta, pdb, and newick

    • calculate and interactively explore sequence statistics; calculate sequence properties; analyze motifs; design primers; find restriction enzymes

    • calculate and interactively explore amino acid sequence statistics; calculate sequence properties; find cleavage enzymes

    • multiple, pairwise, and profile sequence alignments using dynamic programming algorithms; blast searches and alignments; standard and custom scoring matrices

    • reconstruct, view, interact with, and edit phylogenetic trees; bootstrap methods for confidence assessment; synonymous and nonsynonymous analysis
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