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segmentation -凯发k8网页登录

medical image segmentation using deep learning, interactive labeling app, or image processing algorithms

image segmentation is the process of partitioning an image into regions. semantic segmentation associates each pixel or voxel in an image with a class label that describes the meaning of an image region, such as bone, tumor, or background. you can perform medical image semantic segmentation using deep learning, the interactive medical image labeler app, or image processing algorithms. deep learning workflows require deep learning toolbox™ and computer vision toolbox™.

apps

medical image labelerinteractively explore, label, and publish animations of 2-d or 3-d medical image data

functions

binarize 2-d grayscale image or 3-d volume by thresholding
global image threshold using otsu's method
multilevel image thresholds using otsu’s method
global histogram threshold using otsu's method
adaptive image threshold using local first-order statistics
select contiguous image region with similar gray values using flood-fill technique
watershed transform
segment image into foreground and background using active contours (snakes) region growing technique
binary image segmentation using fast marching method
calculate weights for image pixels based on image gradient
calculate weights for image pixels based on grayscale intensity difference
k-means clustering based image segmentation
k-means clustering based volume segmentation
2-d superpixel oversegmentation of images
3-d superpixel oversegmentation of 3-d image

load and prepare training data

ground truth label data for medical images
change file paths in ground truth data for medical images
merge two or more groundtruthmedical objects
datastore for image data
datastore for pixel label data
datastore for extracting random 2-d or 3-d random patches from images or pixel label images
combine data from multiple datastores
transform datastore

import network

import layers from keras network
import layers from tensorflow network
import layers from onnx network

design networks

create fully convolutional network layers for semantic segmentation
create segnet layers for semantic segmentation
create 3-d u-net layers for semantic segmentation of volumetric images
create u-net layers for semantic segmentation
create pixel classification layer for semantic segmentation
create pixel classification layer using generalized dice loss for semantic segmentation

segment images

semantic image segmentation using deep learning
overlay label matrix regions on 2-d image
display volume
jaccard similarity coefficient for image segmentation
sørensen-dice similarity coefficient for image segmentation
contour matching score for image segmentation

topics


  • preprocess data with deterministic operations such as normalization or color space conversion, or augment training data with randomized operations such as random cropping or color jitter.


  • create datastores that contain images and pixel label data from a groundtruthmedical object for training semantic segmentation deep learning networks.

  • (deep learning toolbox)

    learn how to use datastores in deep learning applications.

  • (deep learning toolbox)

    discover all the deep learning layers in matlab®.

related information

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